User blog comment:AndRollOut/Deck Damage Output Estimator/@comment-11668059-20130731224743/@comment-11482499-20130802040253

Yep, the weapon and episode faction bonuses are already included in the figures that you see when you hit "EDIT" in the Team screen. (That's why in between episodes your bots' attack is like 10% lower and your DP drops, because they lose the episode faction bonus)

And thanks!